Location: SLC transporters @ c8bc4b889b38 / Facilitated transporter / CellMLV2 / GLUT1_BG_ss_io.sedml

Author:

Weiwei Ai <wai484@aucklanduni.ac.nz>

Date:

2024-04-18 18:08:11+12:00

Desc:

Add BG for steady-state simulation (i.e, a longer pulse)

Permanent Source URI:

https://models.physiomeproject.org/workspace/b65/rawfile/c8bc4b889b3850d67cea87048416591cdb681ffd/Facilitated transporter/CellMLV2/GLUT1_BG_ss_io.sedml

<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version4" level="1" version="4">
  <listOfModels>
    <model id="GLUT1_BG_ss_io" language="urn:sedml:language:cellml" source="GLUT1_BG_ss_io.cellml"/>
  </listOfModels>
  <listOfSimulations>
    <uniformTimeCourse id="sim_GLUT1_BG_ss_io" initialTime="0" outputStartTime="0" outputEndTime="25" numberOfSteps="25">
      <algorithm name="VODE" kisaoID="KISAO:0000535"/>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfTasks>
    <task id="task_GLUT1_BG_ss_io" modelReference="GLUT1_BG_ss_io" simulationReference="sim_GLUT1_BG_ss_io"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="dg_GLUT1_BG_ss_io_t" name="dg_GLUT1_BG_ss_io_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_ss_io_t </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_ss_io_t" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_GLUT1_BG_ss_io" modelReference="GLUT1_BG_ss_io"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_BG_ss_io_v_free" name="dg_GLUT1_BG_ss_io_v_free">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_ss_io_v_free </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_ss_io_v_free" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;v_free&quot;]" taskReference="task_GLUT1_BG_ss_io" modelReference="GLUT1_BG_ss_io"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_BG_ss_io_v" name="dg_GLUT1_BG_ss_io_v">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_ss_io_v </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_ss_io_v" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;v&quot;]" taskReference="task_GLUT1_BG_ss_io" modelReference="GLUT1_BG_ss_io"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_BG_ss_io_q_Ai" name="dg_GLUT1_BG_ss_io_q_Ai">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_ss_io_q_Ai </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_ss_io_q_Ai" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;q_Ai&quot;]" taskReference="task_GLUT1_BG_ss_io" modelReference="GLUT1_BG_ss_io"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="11.1111111111111"/>
      </listOfParameters>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <report id="report_task_GLUT1_BG_ss_io" name="report_task_GLUT1_BG_ss_io">
      <listOfDataSets>
        <dataSet id="dataset_GLUT1_BG_ss_io_t" label="t" dataReference="dg_GLUT1_BG_ss_io_t"/>
        <dataSet id="dataset_GLUT1_BG_ss_io_v_free" label="v_free" dataReference="dg_GLUT1_BG_ss_io_v_free"/>
        <dataSet id="dataset_GLUT1_BG_ss_io_v" label="v" dataReference="dg_GLUT1_BG_ss_io_v"/>
        <dataSet id="dataset_GLUT1_BG_ss_io_q_Ai" label="q_Ai" dataReference="dg_GLUT1_BG_ss_io_q_Ai"/>
      </listOfDataSets>
    </report>
  </listOfOutputs>
</sedML>